wiki:GIS/InstallationGuidelines/Linux

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Version 214 (modified by Biplov Bhandari, 9 years ago) ( diff )
--

Installation of GIS Tools on Linux

Suggest these CLI tools for data manipulation:

GDAL's ogr2ogr, etc
Convert SRTM to GeoTIFF

GDAL

Simple functionality can be got from the Debian package:

apt-get install gdal-bin

Advanced functionality requires the latest version (install into /usr/local):

apt-get install -y g++ libproj-dev
cd /tmp
wget http://download.osgeo.org/gdal/1.11.2/gdal-1.11.2.tar.gz
tar zxvf gdal-1.11.2.tar.gz
cd gdal-1.11.2
./configure --with-python CPPFLAGS="-fPIC"
make
make install
cd ..
ldconfig

Python bindings (e.g. needed for Shapefile Layers and GADM importer) included in above version.

e.g. If you are serving GeoTIFFs larger than 2Gb, you should create an Image Pyramid:

mkdir pyramid
~/gdal-1.11.2/swig/python/scripts/gdal_retile.py -v -s_srs EPSG:4326 -r bilinear -levels 4 -ps 2048 2048 -co "TILED=YES" -co "COMPRESS=JPEG" -targetDir pyramid mygeotiff.tif

PostGIS

PostGIS adds Spatial storage to PostgreSQL (visit this page to configure PostgreSQL before returning here to continue with the GIS parts)

alternatively these can be installed as part of OpenGeoSuite

NB PostGIS in Debian Lenny or Squeeze is rather old - recommend using the version in Wheezy, ideally the upgraded from external packages (native version shown commented):

Wheezy users:

apt-get install -y postgis
su postgres
createuser -s -P gis

createdb -O gis -E UTF8 gis -T template0
#psql -d gis -f /usr/share/postgresql/9.1/contrib/postgis-1.5/postgis.sql
#psql -d gis -f /usr/share/postgresql/9.1/contrib/postgis-1.5/spatial_ref_sys.sql
psql -d gis -f /usr/share/postgresql/9.3/extension/postgis--2.1.5.sql

Squeeze users:

apt-get install -y postgresql-8.4-postgis
su postgres
createuser -s -P gis

createdb -O gis gis
createlang plpgsql -d gis
psql -d gis -f /usr/share/postgresql/8.4/contrib/postgis-1.5/postgis.sql
psql -d gis -f /usr/share/postgresql/8.4/contrib/postgis-1.5/spatial_ref_sys.sql

Ubuntu users (Lucid/PostgreSQL 8.4/Post-GIS 1.4) - the paths are slightly different

psql -d gis -f /usr/share/postgresql/8.4/contrib/postgis.sql
psql -d gis -f /usr/share/postgresql/8.4/contrib/spatial_ref_sys.sql

Add Spherical Mercator projection (900913. See http://www.cadmaps.com/gisblog/?p=81 for 54004):

Not needed with PostGIS-1.5 :)

psql gis
INSERT into spatial_ref_sys (srid, auth_name, auth_srid, srtext, proj4text) values (900913 ,'EPSG',900913,'GEOGCS["WGS 84", DATUM["World Geodetic System 1984", SPHEROID["WGS 84", 6378137.0, 298.257223563,AUTHORITY["EPSG","7030"]], AUTHORITY["EPSG","6326"]],PRIMEM["Greenwich", 0.0, AUTHORITY["EPSG","8901"]], NIT["degree",0.017453292519943295], AXIS["Longitude", EAST], AXIS["Latitude", NORTH],AUTHORITY["EPSG","4326"]], PROJECTION["Mercator_1SP"],PARAMETER["semi_minor", 6378137.0], PARAMETER["latitude_of_origin",0.0], PARAMETER["central_meridian", 0.0], PARAMETER["scale_factor",1.0], PARAMETER["false_easting", 0.0], PARAMETER["false_northing", 0.0],UNIT["m", 1.0], AXIS["x", EAST], AXIS["y", NORTH],AUTHORITY["EPSG","900913"]] |','+proj=merc +a=6378137 +b=6378137 +lat_ts=0.0 +lon_0=0.0 +x_0=0.0 +y_0=0 +k=1.0 +units=m +nadgrids=@null +no_defs');

Using PostGIS in Sahana

InstallationGuidelines/PostgreSQL

Java

Update: As of version 2.0, a Java Runtime Environment (JRE) is sufficient to run GeoServer. GeoServer no longer requires a Java Development Kit (JDK). Also note, OpenJDK does not work optimally with GeoServer.

for Debian 7 Wheezy:

# Remove OpenJDK & dependent packages
apt-get remove openjdk-6-jre-lib
# Install a fake package to tell Debian that a valid Java is installed
wget http://babel.ls.fi.upm.es/~vpablos/others/packages/debian/oracle-java-pkg-for-debian_2.0.0+r20140717_all.deb
dpkg -i oracle-java-pkg-for-debian_2.0.0+r20140717_all.deb
# Download Sun Java via Browser (need to accept T&C)
# http://www.oracle.com/technetwork/java/javase/downloads/server-jre7-downloads-1931105.html
http://download.oracle.com/otn-pub/java/jdk/7u45-b18/server-jre-7u75-linux-x64.tar.gz
mkdir /usr/lib/jvm
cd /usr/lib/jvm
tar zxvf /tmp/server-jre-7u75-linux-x64.tar.gz
ln -s /usr/lib/jvm/jdk1.7.0_75 /usr/lib/jvm/java-sun
rm /usr/bin/java
ln -s /usr/lib/jvm/java-sun/bin/java /usr/bin/java
rm /usr/bin/javac
ln -s /usr/lib/jvm/java-sun/bin/javac /usr/bin/javac

vi /etc/profile.d/java
JAVA_HOME=/usr/lib/jvm/java-sun
export JAVA_HOME

or,

for ubuntu 10.x:

vim /etc/apt/sources.list
#uncomment partner repository
sudo apt-get update
sudo apt-get install sun-java6-jre

sudo emacs /etc/environment
JAVA_HOME=/usr/lib/jvm/java-6-sun
export JAVA_HOME

or,

for debian 6 Squeeze

vim /etc/apt/sources.list
# for sun-java packages in unstable
deb http://ftp.debian.org/debian/ unstable non-free
deb-src http://ftp.debian.org/debian/ unstable non-free

apt-get update
apt-get install sun-java6-jdk
vim /etc/profile
JAVA_HOME=/usr/lib/jvm/java-6-sun
export JAVA_HOME

The Sun installer will present a license in a curses form. Depending on your terminal emulator, arrow keys may not work for navigation. If not, try ^f and ^b to navigate to the <ok>, and enter to select. Then you'll be asked to accept (or not) the license -- again use ^f or ^b to move to <yes> and hit enter.

or:

Download the JDK & install it:

cd /usr/local
sh ~/jdk-6u21-linux-i586.bin
ln -sf /usr/local/jdk1.6.0_21 /usr/local/java
vim /etc/profile
JAVA_HOME=/usr/local/java
export JAVA_HOME

Install the JAI extensions (improves performance for GeoServer WMS), the downloads available are listed here

64-bit:

cd /usr/lib/jvm/java-sun
wget http://download.java.net/media/jai/builds/release/1_1_3/jai-1_1_3-lib-linux-amd64-jdk.bin
wget http://download.java.net/media/jai-imageio/builds/release/1.1/jai_imageio-1_1-lib-linux-amd64-jdk.bin
sh jai-1_1_3-lib-linux-amd64-jdk.bin
# accept license
export _POSIX2_VERSION=199209
sh jai_imageio-1_1-lib-linux-amd64-jdk.bin
# accept license
rm jai-1_1_3-lib-linux-amd64-jdk.bin
rm jai_imageio-1_1-lib-linux-amd64-jdk.bin

If you installed JRE (sudo sh on Ubuntu)

cd /usr/lib/jvm/java-sun/jre
wget http://download.java.net/media/jai/builds/release/1_1_3/jai-1_1_3-lib-linux-amd64-jre.bin
sh jai-1_1_3-lib-linux-amd64-jre.bin 
#accept licence and replace [yes]
rm jai-1_1_3-lib-linux-amd64-jre.bin

32-bit:

cd /usr/lib/jvm/java-sun
wget http://download.java.net/media/jai/builds/release/1_1_3/jai-1_1_3-lib-linux-i586-jdk.bin
wget http://download.java.net/media/jai-imageio/builds/release/1.1/jai_imageio-1_1-lib-linux-i586-jdk.bin
sh jai-1_1_3-lib-linux-i586-jdk.bin
# accept license
export _POSIX2_VERSION=199209
sh jai_imageio-1_1-lib-linux-i586-jdk.bin
# accept license
rm jai-1_1_3-lib-linux-i586-jdk.bin
rm jai_imageio-1_1-lib-linux-i586-jdk.bin

Apache Tomcat

Tomcat is the recommended way to deploy Java applications:

apt-get install -y tomcat7 libtcnative-1

# http://docs.geoserver.org/latest/en/user/production/container.html#optimize-your-jvm
# Select appropriate value based on your available RAM
vim /etc/default/tomcat7
JAVA_HOME=/usr/lib/jvm/java-sun
JAVA_OPTS="-Djava.awt.headless=true -Xmx256m -Xms48m -XX:MaxPermSize=128m -XX:SoftRefLRUPolicyMSPerMB=36000 -XX:+UseConcMarkSweepGC"
JAVA_OPTS="-Djava.awt.headless=true -Xmx2g -Xms64m -XX:MaxPermSize=128m -XX:SoftRefLRUPolicyMSPerMB=36000 -XX:+UseConcMarkSweepGC"

# Should be set already:
#vim /etc/init.d/tomcat7
#TOMCAT7_SECURITY=no

# Modify logging
vim /etc/tomcat7/server.xml
<Valve className="org.apache.catalina.valves.AccessLogValve" directory="logs"
               ...
               ...
               rotatable="false" />

vim /etc/logrotate.d/tomcat7
/var/log/tomcat7/catalina.out /var/log/tomcat7/localhost_access_log..txt {
  copytruncate
  daily
  rotate 7
  compress
  missingok
  create 640 tomcat7 adm
}

/etc/init.d/tomcat7 restart

Ubuntu 10.x:

sudo apt-get install unzip lynx tomcat6 tomcat6-admin libapache2-mod-jk
vim /etc/libapache2-mod-jk/workers.properties
workers.java_home=/usr/lib/jvm/java-6-sun

/etc/init.d/tomcat6 restart
# should see stopping [OK] and starting [OK]

# change some permissions
cd /var/lib/tomcat6/
sudo chown -R tomcat6:tomcat6 logs work
sudo chown tomcat6:tomcat6 /usr/share/tomcat6

# check/change service port - default 8080
/etc/tomcat6/server.xml

Enable access to GeoServer on Port 80 (assuming not using Cherokee):

# if using multiple Tomcats behind a single apache load-balancer
apt-get install apache2-mpm-worker
a2enmod proxy_ajp
a2dissite default

vim /etc/tomcat7/server.xml
# Uncomment these lines (& add the extra options)
<Listener className="org.apache.catalina.core.AprLifecycleListener" SSLEngine="off" />
# maxThreads here should match the Apache MPM's MaxClients
<Connector port="8009" protocol="AJP/1.3" redirectPort="8443" emptySessionPath="true" enableLookups="false" maxThreads="256" connectionTimeout="45000" />

/etc/init.d/tomcat7 restart

vim /etc/apache2/ports.conf
NameVirtualHost *:80
Listen 80

vim /etc/apache2/sites-available/geo
<VirtualHost *:80>
  ServerName geo.eden.sahanafoundation.org
  ServerAdmin webmaster@sahanafoundation.org
  DocumentRoot /var/www

  ProxyPreserveHost on
  # These 2 lines should be disabled in Production
  ProxyPass /geoserver/ ajp://localhost:8009/geoserver/
  ProxyPassReverse /geoserver ajp://localhost:8009/geoserver/
  # These lines should be enabled in Production
  ProxyPass /geoserver/ ajp://localhost:8009/geoserver/gwc
  ProxyPassReverse /geoserver/gwc ajp://localhost:8009/geoserver/gwc
  ProxyPass /geoserver/ ajp://localhost:8009/geoserver/wfs
  ProxyPassReverse /geoserver/wfs ajp://localhost:8009/geoserver/wfs
  ProxyPass /geoserver/ ajp://localhost:8009/geoserver/wms
  ProxyPassReverse /geoserver/wms ajp://localhost:8009/geoserver/wms/

  ErrorLog /var/log/apache2/geo_error.log
  LogLevel warn
  CustomLog /var/log/apache2/geo_access.log combined
</VirtualHost>

a2ensite geo
/etc/init.d/apache2 restart

WMS/WFS

GeoServer

(recommended)

apt-get install -y unzip
cd
wget http://kent.dl.sourceforge.net/project/geoserver/GeoServer/2.7.0/geoserver-2.7.0-war.zip

cd /var/lib/tomcat7/webapps
unzip ~/geoserver-2.7.0-war.zip

/etc/init.d/tomcat7 restart

# Allow time to decompress the .war
/etc/init.d/tomcat7 stop
# Move the data directory somewhere to allow upgrades to happen easily
mkdir /var/gis
mv /var/lib/tomcat7/webapps/geoserver/data /var/gis/geoserver_data
vim /var/lib/tomcat7/webapps/geoserver/WEB-INF/web.xml
<!-- Uncomment -->
<param-name>GEOSERVER_DATA_DIR</param-name>
<param-value>/var/gis/geoserver_data</param-value>

/etc/init.d/tomcat7 restart

vim /etc/iptables.rules
-A INPUT -p tcp --dport 8080 -j ACCEPT

reboot

CSS module:

cd /tmp
wget http://kent.dl.sourceforge.net/project/geoserver/GeoServer%20Extensions/2.7.0/geoserver-2.7.0-css-plugin.zip
cd /var/lib/tomcat7/webapps/geoserver/WEB-INF/lib/
unzip /tmp/geoserver-2.7.0-css-plugin.zip
/etc/init.d/tomcat7 restart

Add fonts:

cp *.ttf /usr/lib/jvm/java-6-sun/jre/lib/fonts
/etc/init.d/tomcat7 restart

GDAL Image Formats (although generally are better off using GDAL to convert to GeoTIFF for serving, if possible):

http://docs.geoserver.org/latest/en/user/services/wcs/basics.html

cd /tmp
wget https://java.net/downloads/imageio-ext/Releases/1.0.5/native-libraries/linux64/imageio-ext-1.0.5-linux64-base-lib.tar.gz
mkdir -p /usr/local/lib/imageio-ext
cd /usr/local/lib/imageio-ext
tar zxvf /tmp/imageio-ext-1.0.5-linux64-base-lib.tar.gz
vim /etc/default/tomcat7
LD_LIBRARY_PATH=/usr/local/lib/imageio-ext

cd /tmp
wget http://kent.dl.sourceforge.net/project/geoserver/GeoServer%20Extensions/2.7.0/geoserver-2.7.0-gdal-plugin.zip
cd /var/lib/tomcat7/webapps/geoserver/WEB-INF/lib/
unzip /tmp/geoserver-2.7.0-gdal-plugin.zip
/etc/init.d/tomcat7 restart

Cache of downloadable (if main site has issues):

http://eden.sahanafoundation.org/raw-attachment/wiki/InstallationGuidelinesGISDataLinux/imageio-ext-1.0.5-linux64-base-lib.tar.gz

http://geo.host.domain:8080/geoserver

Configure:

Upgrades:

/etc/init.d/tomcat7 stop

mv /var/lib/tomcat7/webapps/geoserver ~/geoserver-2.5.1_backup

cd /var/lib/tomcat7/webapps
unzip ~/geoserver-2.7.1.1-war.zip

/etc/init.d/tomcat7 restart

# Allow time to decompress the .war
/etc/init.d/tomcat7 stop
vim /var/lib/tomcat7/webapps/geoserver/WEB-INF/web.xml
<!-- Uncomment -->
<param-name>GEOSERVER_DATA_DIR</param-name>
<param-value>/var/gis/geoserver_data</param-value>

/etc/init.d/tomcat7 restart

MapServer

TinyOWS can complement this for WFS-T

OpenStreetMap

See GIS/OpenStreetMap

Printing

For Printing TMS layers, need to compile the Trunk version of the MapFish Print Module & then serve the resultant .war with Tomcat:

Ensure that JAVA_HOME points to a JDK.

Download & build source:

svn checkout http://www.mapfish.org/svn/mapfish/print/trunk/
cd trunk
./gradlew build

Configure Tomcat

vim /etc/tomcat6/policy.d/04webapps.policy
permission java.io.FilePermission "/var/lib/tomcat6/webapps/print-servlet-1.2-SNAPSHOT/WEB-INF/classes/logging.properties", "read";

/etc/init.d/tomcat6 restart

vim /etc/apache2/sites-available/print


ln -s /etc/apache2/sites-available/print /etc/apache2/sites-enabled/print
/etc/init.d/apache2 restart

Copy the WAR file to your %WEBAPPS% directory:

cp trunk/build/libs/print-servlet-1.2-SNAPSHOT.war /var/lib/tomcat6/webapps

(re)Start Tomcat
Configure the Map URL for Eden to:
- http://host.domain:8080/print-servlet-1.2-SNAPSHOT/pdf/
Configure %WEBAPPS%\print-servlet-1.2-SNAPSHOT\config.yaml: http://www.mapfish.org/doc/print/configuration.html

Printing can also be done within GeoServer:

http://docs.geoserver.org/stable/en/user/community/printing/

The 2.0.x versiondidn't support TMS layers, like OpenStreetMap. @ToDo: Test this latest version.

wget http://gridlock.opengeo.org/geoserver/2.1.x/community-latest/geoserver-2.1-SNAPSHOT-printing-plugin.zip
cd /var/lib/tomcat6/webapps/geoserver/WEB-INF/lib
unzip ~/geoserver-2.1-SNAPSHOT-printing-plugin.zip
/etc/init.d/tomcat6 restart
#wget http://geoserver.org/download/attachments/20938936/printing-data-2.0.x.zip
#cd /usr/local/geoserver-2.0.2/data_dir
#unzip ~/printing-data-2.0.x.zip
#/usr/local/geoserver/bin/shutdown.sh
#/usr/local/geoserver/bin/startup.sh &

Configure by editing /var/gis/geoserver_data_dir/printing/config.yaml according to Documentation

Print to Image

http://trac.mapfish.org/trac/mapfish/ticket/161

Proxy / Cache

A Proxy can cache remote servers &/or do Reprojection or Combination of Layers

If just wanting to cache the WMS served by GeoServer, then it's probably best to use the integrated GeoWebCache:

http://geowebcache.org

Alternatives:

http://tilecache.org
- http://github.com/migurski/GridTile

http://mapproxy.org

http://mapproxy.org/docs/1.7.0/install.html

adduser --system --disabled-password mapproxy
apt-get install -y libgeos-dev libgdal-dev
wget http://pypi.python.org/packages/source/M/MapProxy/MapProxy-1.7.1.tar.gz
tar zxvf MapProxy-1.7.1.tar.gz
cd MapProxy-1.7.1
python setup.py install
cd ..

cd /home
mapproxy-util create -t base-config mapproxy
cd mapproxy
mapproxy-util create -t wsgi-app -f mapproxy.yaml config.py

Test: http://localhost:8080/demo/
WSGI configuration

Cleaning or Seeding:

mapproxy-seed -s seed.yaml -f mapproxy.yaml

NB This can reveal issues such as the max-width limitation on ArcGIS when converting 4326 to 900913:

ArcGIS-side fix
Request a Mercator if you can (3857, 102100 or 102113)

Apache

vim /etc/apache2/sites-available/proxy
<VirtualHost *:80>
  ServerName proxy.sahanafoundation.org
  ServerAdmin webmaster@sahanafoundation.org
  
  WSGIScriptAlias / /home/mapproxy/etc/config.wsgi
  WSGIDaemonProcess mapproxy user=www-data group=www-data home=/home/mapproxy processes=2 maximum-requests=100
  
  <Location "/">
    Order deny,allow
    Allow from all
    WSGIProcessGroup mapproxy
  </Location>

  ErrorLog /var/log/apache2/proxy_error.log
  LogLevel warn
  CustomLog /var/log/apache2/proxy_access.log combined
</VirtualHost>

mkdir -p /home/mapproxy/var
chown www-data /home/mapproxy/var
a2ensite proxy
/etc/init.d/apache2 force-reload

Cherokee/uWSGI

vim /home/mapproxy/uwsgi.xml
<uwsgi>
    <pythonpath>/home/mapproxy/</pythonpath>
    <app mountpoint="/">
        <script>config</script>
    </app>
    <workers>4</workers>
</uwsgi>

vim /usr/local/etc/cherokee/cherokee.conf
vserver!30!rule!300!encoder!deflate = allow
vserver!30!rule!300!encoder!gzip = allow
vserver!30!rule!300!handler = uwsgi
vserver!30!rule!300!handler!balancer = round_robin
vserver!30!rule!300!handler!balancer!source!10 = 2
vserver!30!rule!300!handler!check_file = 0
vserver!30!rule!300!handler!error_handler = 1
vserver!30!rule!300!handler!pass_req_headers = 1
vserver!30!rule!300!handler!xsendfile = 0
vserver!30!rule!300!match = directory
vserver!30!rule!300!match!directory = /proxy
source!2!env_inherited = 1
source!2!group = mapproxy
source!2!host = 127.0.0.1:59026
source!2!interpreter = /usr/local/bin/uwsgi -s 127.0.0.1:59026 -x /home/mapproxy/uwsgi.xml
source!2!nick = uWSGI 2
source!2!timeout = 300
source!2!type = interpreter
source!2!user = mapproxy

http://mapproxy.org/docs/1.4.0/configuration.html

http://lists.osgeo.org/pipermail/mapproxy/2010-December/000301.html

vim /usr/share/proj/epsg
# Google Maps Global Mercator
<900913> +proj=merc +a=6378137 +b=6378137 +lat_ts=0.0 +lon_0=0.0 +x_0=0.0 +y_0=0 +k=1.0 +units=m +nadgrids=@null +no_defs +over

Configuration for TRMM

TRMM Rainfall Monitoring

http://mapproxy.org/docs/1.4.0/configuration_examples.html

vim /home/mapproxy/etc/mapproxy.yaml
layers:
  - name: TRMM_3B42_V6_DAILY
    title: Rainfall (1 day)
    sources: [TRMM_3B42_V6_DAILY_cache, TRMM_3B42_V6_DAILY]
  - name: TRMM_3B42_V6_10_DAY
    title: Rainfall (10 days)
    sources: [TRMM_3B42_V6_10_DAY_cache, TRMM_3B42_V6_10_DAY]
caches:
  TRMM_3B42_V6_DAILY_cache:
    grids: [GLOBAL_MERCATOR, global_geodetic_sqrt2]
    sources: [TRMM_3B42_V6_DAILY]
  TRMM_3B42_V6_10_DAY_cache:
    grids: [GLOBAL_MERCATOR, global_geodetic_sqrt2]
    sources: [TRMM_3B42_V6_10_DAY]
sources:
  TRMM_3B42_V6_DAILY:
    type: wms
    supported_srs: ['EPSG:4326']
    req:
      url: http://gdata2.sci.gsfc.nasa.gov/daac-bin/wms_trmm?
      layers: TRMM_3B42_V6_DAILY
      transparent: true
  TRMM_3B42_V6_10_DAY:
    type: wms
    supported_srs: ['EPSG:4326']
    req:
      url: http://gdata2.sci.gsfc.nasa.gov/daac-bin/wms_trmm?
      layers: TRMM_3B42_V6_10_DAY
      transparent: true

UserGuidelines/GIS/Data

Attachments (2)

osm2pgsql_centroid.patch (18.3 KB ) - added by Fran Boon 14 years ago.
imageio-ext-1.0.5-linux64-base-lib.tar.gz (1.8 MB ) - added by Fran Boon 13 years ago. GDAL support for JAI (since download site no longer available)

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